Lee played with Shamrock Rovers U19 side in 2011/12. He made the bench for the first team during the club's 2012 Leinster Senior Cup run but left the club in July 2012. In January 2015 Lee joined Bohemians from Firhouse Clover under new manager Keith Long. Lee only made one league appearance during the 2015 season, which came in the 0-0 draw with Bray Wanderers in May. He stayed as the Gypsies' no.2 goalkeeper for the 2016 season and didn't make a league appearance before leaving in July 2016 to sign for fellow Premier Division side Bray Wanderers.

At Bray Lee again found himself as the no.2 'keeper, this time to Peter Cherrie, and he did not make a league appearance in his four months at the Carlisle Grounds. However, shortly before Christmas he was signed up by Harry Kenny for Bray's 2017 campaign.

In January 2018, Lee signed with Shelbourne.

In December 2018, Lee signed with Longford Town. In December 2020, Lee re-signed with Longford for their 2021 Premier Division campaign.